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protein_contact_map
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| protein_contact_map [2020/06/24 19:19] – created edit | protein_contact_map [2020/06/24 21:30] (current) – edit | ||
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| (author: Dr. Min-Kang Hsieh) | (author: Dr. Min-Kang Hsieh) | ||
| - | This brief instruction is used to generate protein contact maps by VMD script. The VMD script is run in Deepthought instead of VMD software. | + | This brief instruction is used to generate protein contact maps by a VMD script. The VMD script is run in Deepthought instead of VMD software. |
| The scripts are in the DT2 path : **/ | The scripts are in the DT2 path : **/ | ||
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| Removal non-physical spots on the map | Removal non-physical spots on the map | ||
| - | Here is an example (see the figures below) for comparison of maps before and after screen off non-physical spots. Frequency calculation collects frequency counts for distant | + | Here is an example (see the figures below) for comparison of maps before and after screen off non-physical spots. Frequency calculation collects frequency counts for distance |
| {{: | {{: | ||
protein_contact_map.1593040799.txt.gz · Last modified: 2020/06/24 19:19 by edit