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protein_contact_map

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protein_contact_map [2020/06/24 19:19] – created editprotein_contact_map [2020/06/24 21:30] (current) – edit
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 (author: Dr. Min-Kang Hsieh) (author: Dr. Min-Kang Hsieh)
  
-This brief instruction is used to generate protein contact maps by VMD script. The VMD script is run in Deepthought instead of VMD software.+This brief instruction is used to generate protein contact maps by a VMD script. The VMD script is run in Deepthought instead of VMD software.
  
 The scripts are in the DT2 path : **/lustre/mhsieh/contactmap/** The scripts are in the DT2 path : **/lustre/mhsieh/contactmap/**
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 Removal non-physical spots on the map Removal non-physical spots on the map
  
-Here is an example (see the figures below) for comparison of maps before and after screen off non-physical spots. Frequency calculation collects frequency counts for distant < 10 Å.+Here is an example (see the figures below) for comparison of maps before and after screen off non-physical spots. Frequency calculation collects frequency counts for distance < 10 Å.
  
 {{:contact_map_1.png?nolink&200|}} {{:contact_map_1.png?nolink&200|}}
protein_contact_map.1593040799.txt.gz · Last modified: 2020/06/24 19:19 by edit