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--- distance_to_bilayer [2021/08/31 18:40] – edit
+++ distance_to_bilayer [2021/08/31 18:53] (current) – edit
@@ Line 53: / Line 53: @@
      calc z1 = ?zave
      echo @zd @zu @z1
+For the EDP method of position determination follow the regular EDP process and then develop a .cmp file that selects the specific atom names that are needed to be measured. A separate row for each group that needs to be labled. Follow the templates of the lipids generated in the EDP process.
+Finally, use MATLAB and the code below to do the integral. Where the neg is for negative Z positions and the pos is for the positive Z from (0:end)
+[
+trapz(z_control_neg,dmps_control_phos_neg.*z_control_neg)/trapz(z_control_neg,dmps_control_phos_neg)
+trapz(z_control_pos,dmps_control_phos_pos.*z_control_pos)/trapz(z_control_pos,dmps_control_phos_pos)
+]