stampede2
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stampede2 [2017/12/21 19:48] – edit | stampede2 [2020/07/07 17:05] (current) – admin | ||
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- | The instructions here assume you know the basics of running NAMD and have done it on a cluster like DT already. The details specific to Stampede2 are presented here. | + | The instructions here assume you know the basics of running NAMD and have done it on a cluster like DT already. The details specific to Stampede2 are presented here. Stampede2 has 1T of space for each user, so clear out your data once in a while. |
Your working directory should look similar to this\\ | Your working directory should look similar to this\\ | ||
/ | / | ||
- | Note that you need the stampede2 directory | + | Note that you need the stampede2 directory.\\ |
- | Also, you can type '' | + | Also, you can type '' |
+ | |||
+ | <code commend> | ||
+ | cdw | ||
+ | setfacl -d -m u: | ||
+ | </ | ||
Line 19: | Line 24: | ||
{{ : | {{ : | ||
- | Only dyn.csh changes if you're using the SKX nodes. For 30k atoms, 2 nodes is optimal. For 70k atoms, 3 nodes is ok but 4 is not ok.\\ | + | Only dyn.csh changes if you're using the SKX nodes. For 30k atoms, 2 nodes is optimal. For 70k atoms, 3 nodes is ok but 4 is not ok. 4 tasks per node is recommended\\ |
{{ :dyn.csh.gz |}} | {{ :dyn.csh.gz |}} | ||
+ | |||
+ | An important note: in '' |
stampede2.1513903710.txt.gz · Last modified: 2017/12/21 19:48 by edit