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Interdigitation Analysis

Author: Eric Wang

This instruction is very similar to EDP because it relies on density profiles. I removed recentering from this analysis to save space. Add it in if you haven't done EDP.

Download Script: interdig-script.tar.gz
Download Example: interdig-ex.tar.gz

Density Calcs

This section is nearly identical to EDP density calcs. The only difference lies in the getatomnd_1.inp

 sele resname @SEG .and. (type @TYP) **.and. resid 1:100** end

Adjust the bolded section for how many lipids per leaflet you have

Adjust in the bot directory as well

 sele resname @SEG .and. (type @TYP) **.and. resid 101:200** end