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--- tilt_angle [2021/06/01 12:54] – admin
+++ tilt_angle [2025/01/17 09:46] (current) – admin
@@ Line 2: / Line 2: @@
 **Brief instruction to obtain tilt angle distribution** \\
-Authors: Xiaohong Zhuang and Viviana Monje
+Authors: Xiaohong Zhuang and Viviana Monje\\
 Updated: Dr. Jeff Klauda (2021)
-This brief instruction is used to calculate tilt angle distribution of sterols/cholestrols. The scripts that you need are in DT2 path: **/lustre/jbklauda/scripts/tilt
+This brief instruction is used to calculate tilt angle distribution of sterols/cholestrols. The scripts that you need are in ZT1 path: **/afs/shell.umd.edu/project/energybio/shared/jbklauda/scripts/tilt
 **
 or using zip file: {{ :tilt.gz |}}
-In each sbatch file, the DT2 charmm are provided.
+In each sbatch file, the ZT1 charmm are provided.
 Copy the scripts folder “tilt” from path highlighted above to your directory that have all the dyn files.
@@ Line 151: / Line 151: @@
 As shown in the 1_get.scr file, the four variables are \\
-: Total number of dcd files, which will be value of N in //gettilt.csh// \\
+: Total number of dcd files to be read, which will be value of N in //gettilt.csh// \\
-: last tilt file number, which is the number of lipids of interest, \\
+: last tilt file number, which is the number of lipids of interest per leaflet (not the total), \\
 : first tilt file number \\
 chl1: name to copy final dat file to common directory \\
@@ Line 169: / Line 169: @@
-//Some additional details of the codes here://
+//**Some additional details of the codes here:**//
- (This section only written for helps understanding the code, so it is fine if you don’t understand since no modification is required)
+This section is to aid in the understanding the codes for this tilt calculation.