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--- secondary_structure_vs_time [2021/11/07 19:37] – [Steps] edit
+++ secondary_structure_vs_time [2021/11/07 19:53] (current) – [Steps] edit
@@ Line 18: / Line 18: @@
      sed '1~10!d' sec_structure-$i.dat >> ss_content.dat
    done
+the line sed '1~10!d' in above means, we are only taking every 10th line of the secondary structure vs time.
+To visualize the secondary structure you can use the Matlab file ss_content.m you need to change a few things in this file:  num_residues, num_timesteps, step-size,  and residue names at the end. You can run this file locally on you pc/mac or on the cluster
+{{:sec.jpg?700|}}