Differences

This shows you the differences between two versions of the page.

--- map [2018/10/03 12:48] – edit
+++ map [2019/03/12 11:00] (current) – edit
@@ Line 24: / Line 24: @@
 === Matlab Analysis ===
-  - Once you have gathered all the data files you want for the blocks of trajectory files desired, transfer all of these data files to your home computer with matlab
+  - Once you have gathered all the data files you want for the blocks of trajectory files desired, transfer all of these data files to your home computer that has Matlab
-  -  In matlab you'll upload "ramaplot.m" and navigate the working directory to the path where all your data files are
+  -  In Matlab you'll upload "ramaplot.m" and navigate the working directory to the path where all your data files are
   -  You'll need to edit the ~file~ variable containing the names of all the data files
   -  Likewise, change the name of the plot titles to match the order of your data files in the variable ~titlelist~
@@ Line 32: / Line 32: @@
 === Group of 4 residue analysis ===
-  - This analysis used the matlab script "ResidGroupAnalysis.m"
+  - This analysis used the Matlab script "ResidGroupAnalysis.m"
   - As with the standard analysis, you'll need to adjust the ~file~ and ~titlelist~ variables
+  - You also need to adjust the number of residues in your peptide with the variable ~residues~
+  - The article [[https://www.sciencedirect.com/science/article/pii/S1359027896000466]] shows the effectiveness of using this group analysis compared to standard per residue Ramachandran plots
+  - Example output data is also found in the directory listed above