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analysis
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| analysis [2017/01/03 16:52] – admin | analysis [2021/11/10 19:30] (current) – edit | ||
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| - | Here are the lists of instructions for properties you may want to compute: | + | Here are a list of instructions for properties you may want to compute: |
| - [[Surface Area of Lipid]] (overall) | - [[Surface Area of Lipid]] (overall) | ||
| + | - [[Equilb Test]] and Area Compressibility | ||
| - [[Comp-SA]] (surface area of each lipid component) | - [[Comp-SA]] (surface area of each lipid component) | ||
| - [[SCD]] (chain order parameters) | - [[SCD]] (chain order parameters) | ||
| - [[EDP]] (electron density profiles) | - [[EDP]] (electron density profiles) | ||
| - [[Tilt Angle]] (sterol) | - [[Tilt Angle]] (sterol) | ||
| + | - [[2D RDFs]] | ||
| + | - [[Hydrogen Bonds for Single-Component Bilayers]] | ||
| + | - [[Hydrogen Bonds for Multi-Component Bilayers]] (lipids and sterol) | ||
| + | - [[Lipid Wobble]] (cross-chain) | ||
| + | - [[Lipid Clustering]] | ||
| + | - [[Pairwise 2D-RDF and Clustering]] | ||
| + | - [[Packing Defects]] | ||
| + | - [[Chain Interdigitation]] | ||
| + | - [[Dipole Potential and ESP]] | ||
| + | - [[Drug or Peptide distance to bilayer ]] | ||
| + | - [[1D (Z) NAMD Potential of Mean Force]] | ||
| + | - [[Psi/Phi Mapping and Alpha Beta Helix]] | ||
| + | - [[Interaction Energy of Ligand in Charmm]] | ||
| + | - [[RMSD]] | ||
| + | - [[Adjusting Water Level and Mutating Residues of Existing Simulations]] | ||
analysis.1483480379.txt.gz · Last modified: 2017/01/03 16:52 by admin